Protein Structure Prediction

Häftad, Engelska, 2021

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This thorough new edition explores web servers and software for protein structure prediction and modeling that are freely available to the academic community.

Produktinformation

Utgivningsdatum2021-07-05
Mått178 x 254 x 21 mm
Vikt699 g
FormatHäftad
SpråkEngelska
SerieMethods in Molecular Biology
Antal sidor358
Upplaga4
FörlagSpringer-Verlag New York Inc.
ISBN9781071607107

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Structural Modeling and Ligand Binding Prediction for Analysis of Structure-Unknown and Function-Unknown Proteins Using FORTE Alignment and PoSSuM Pocket Search.- The MULTICOM Protein Structure Prediction Server Empowered by Deep Learning and Contact Distance Prediction.- The Genome3D Consortium for Structural Annotations of Selected Model Organisms.- Estimating the Quality of 3D Protein Models Using the ModFOLD7 Server.- Prediction of Intrinsic Disorder with Quality Assessment Using QUARTER.- Modeling of Three-Dimensional RNA Structures Using SimRNA.- Modeling Protein Homo-Oligomer Structures with GalaxyHomomer Web Server.- Template-Based Modeling of Protein Complexes Using the PPI3D Web Server.- Protein-Protein and Protein-Peptide Docking with ClusPro Server.- Modeling of Protein Complexes and Molecular Assemblies with pyDock.- A Guide for Protein-Protein Docking Using SwarmDock.- Modeling Protein-Protein or Protein-DNA/RNA Complexes Using the HDOCK Webserver.- IDP-LZerD: Software for Modeling Disordered Protein Interactions.- AnAnaS: Software for Analytical Analysis of Symmetries in Protein Structures.- MDockPeP: A Webserver for Blind Prediction of Protein-Peptide Complex Structures.- Protocols for All-Atom Reconstruction and High-Resolution Refinement of Protein-Peptide Complex Structures.- DOCKGROUND Tool for Development and Benchmarking of Protein Docking Procedures.- Molecular Dynamics Flexible Fitting: All You Want to Know about Resolution Exchange.- Protein Structure Modeling from Cryo-EM Map Using MAINMAST and MAINMAST-GUI Plugin.- Protocols for Fast Simulations of Protein Structure Flexibility Using CABS-Flex and SURPASS.