DNA Microarrays

Ulrike Nuber-Max Planck Institute of Molecular Genetics, Berlin, Germany

• 1. Introduction: DNA Microarrays – Ten Years Old, But No Old Hat 2. cDNA Microarray Analysis and Its Role in Toxicology - A Case Study 3. Gene Expression Profiling in Plants Using cDNA Microarrays 4. Identification of Gene Expression Patterns for a Molecular Diagnosis of Kidney Tumors 5. Gene Expression Analysis of Differentiating Neural Progenitor Cells – A Time Course Study 6. A Microarray-Based Screening Method for Known and Novel SNPs 7. From Gene Chips to Disease Chips – New Approach in Molecular Diagnosis of Eye Diseases 8. Multiplexed SNP Genotyping Using an Allele-Specific Primer Extension 9. Profiling the Arabidopsis Transcriptome 10. Affymetrix GeneChip Analyses – The Impact of RNA Quality 11. Molecular Karyotyping by Means of Array CGH: Linking Gene Dosage Alterations to Disease Phenotypes 12. DNA Microarrays: Analysis of Chromosomes and Their Aberrations 13. Mapping Transcription Factor Binding Sites Using ChIP Chip - General Considerations 14. ChIP-on-Chip: Searching for Novel Transcription Factor Targets 15. Turning Photons into Results: Principles of Fluorescent Microarray Scanning 16. Microarray Detection with Laser Scanning Device 17. Normalization Strategies for Microarray Data Analysis 18. Microarray Data Analysis: Differential Gene Expression 19. Clustering and Classification Methods for Gene Expression Data Analysis 20. Statistical Analysis of Microarray Time Course Data 21. Array CGH Data Analysis 22. MIAME