DNA Barcoding

Methods and Protocols

Häftad, Engelska, 2025

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The chapters in this book are organized into six parts: theory, DNA manipulation, specialized barcoding methods, analysis of DNA barcodes, completing a successful DNA barcode project, and barcoding as citizen science.

Produktinformation

Utgivningsdatum2025-04-30
Mått178 x 254 x 32 mm
Vikt1 105 g
FormatHäftad
SpråkEngelska
SerieMethods in Molecular Biology
Antal sidor576
FörlagSpringer-Verlag New York Inc.
ISBN9781071635834

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Biovetenskap inom Naturvetenskap och teknik

Part I DNA Barcoding Theory and Practice.- Creating Virtuous Cycles for DNA Barcoding: A Case Study in Science Innovation, Entrepreneurship, and Diplomacy.- Species Diagnosis and DNA Taxonomy.- Delimiting Species with Single-Locus DNA Sequences.- DNA Barcoding in Species Delimitation: From Genetic Distances to Integrative Taxonomy.- DNA Barcodes in Taxonomic Descriptions.- Part II DNA Manipulation and Sequencing.- Simple, Robust Invertebrate DNA Barcoding: Chelex-Based DNA Extraction and Optimized COI Amplification.- Cost-Effective DNA Extraction for DNA Barcoding Diverse Biological Sample.- DNA Sequencing Technologies and DNA Barcoding.- DNA Barcoding and Metabarcoding Protocols for Species Identification.- Environmental DNA Isolation, Validation, and Preservation Methods.- Part III Specialized DNA Barcoding Methods.- Single-Molecule FRET-Based Multiplexed Detection.- DNA Barcodes using a Dual Nanopore Device.- ddRAD Sequencing and DNA Barcoding.- Scalable, Cost-Effective, and Decentralized DNA Barcoding with Oxford Nanopore Sequencing.- Generating 2D Barcode for DNA Barcode Sequences.- Analyses of Nuclear Reads Obtained using Genome Skimming.- Recent Advances in Closed-Tube Barcoding for FastFish-ID.- Part IV Analyzing DNA Barcode Data.- iTaxoTools 1.0: Improved DNA Barcode Exploration with TaxI2.- DNA Barcode-Based Species Diagnosis with MolD.- Species Delimitation and Exploration of Species Partitions with ASAP and LIMES.- Characteristic Attribute Organization System (CAOS): Identifying Classification Rules Based on Phylogenetically Organized Sequences.- CAOS-R: Character-Based Barcoding.- Classification of DNA Sequence Based on a Non-Gradient Algorithm: Pseudoinverse Learners.- A Measure of the DNA Barcode Gap for Applied and Basic Research.- Guidelines for the Analysis of DNA Barcoding/Metabarcoding Sequencing Data and Interpretation of Publicly Available Databases.- BOLD v4: A Centralized Bioinformatics Platform for DNA-Based Biodiversity Data.- Part V Generating a Successful DNA Barcode Project.- Mega-Barcoding Projects: Delivering National DNA Barcoding Initiatives for Plants.- MetaZooGene Atlas and Database: Reference Sequences for Marine Ecosystems.- Principles for Constructing DNA Barcode Reference Libraries.- Recent Applications of FastFish-ID.- Part VI DNA Barcoding, Teaching, and Citizen Science.- A Rapid, Equipment-Free DNA Isolation Method for DNA Barcoding.- Engaging Students and Teachers as Community Scientists in DNA Barcoding Initiatives.- DNA Barcoding for an Undergraduate Class.- Analysis of DNA Barcodes Using DNA Subway.- A Glossary of DNA Barcoding Terms.