Del 500 - Methods in Enzymology

Methods in Systems Biology

Inbunden, Engelska, 2011

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Systems biology is a term used to describe a number of trends in bioscience research and a movement that draws on those trends. This volume in the Methods in Enzymology series comprehensively covers the methods in systems biology. With an international board of authors, this volume is split into sections that cover subjects such as machines for systems biology, protein production and quantification for systems biology, and enzymatic assays in systems biology research.

This volume in the Methods in Enzymology series comprehensively covers the methods in systems biology
With an international board of authors, this volume is split into sections that cover subjects such as machines for systems biology, protein production and quantification for systems biology, and enzymatic assays in systems biology research

Produktinformation

Utgivningsdatum2011-11-02
Mått152 x 229 x undefined mm
Vikt1 340 g
FormatInbunden
SpråkEngelska
SerieMethods in Enzymology
Antal sidor668
FörlagElsevier Science
ISBN9780123851185

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Biologi inom Naturvetenskap och teknik

Section 1 – Strategies in systems biology. top down, middle-out and bottom-up strategies – Hans V. WesterhoffSection 2 – Machines for systems biology – Roy Goodacre4 chapters explaining the workings of four of the most important measurement techniques for systems biology:Mass spectrometry Microscopy Spectroscopy Section 3 – Nucleic acids and systems biology – James Adaye 4 Chapters on DNA sequencing, Arrays studies, PCR, deep sequencing Section 4 - Protein production and quantification for Systems Biology –Naglis Malys and Kathleen Carroll Chapter 1: Quantification of proteins and their modifications using QconCAT technology Chapter 2: Mass spectrometric based quantitative proteomics using SILACChapter 3: Nucleic Acid Programmable Protein Array (NAPPA) - a just-in-time multiplexed protein expression and purification platformChapter 4: Economical high throughput protein production and purification in prokaryotic and eukaryotic systemsChapter 5: Systems biology of recombinant protein production using Bacillus megateriumChapter 6: Protein production in S. cerevisiae for systems biology studiesSection 5 – Enzymatic Assays in Systems Biology Research Farid Khan, Hanan Messiha and Malgorzata AdamczykChapter 1: Enzymatic Assays in Systems Biology Research: Strategies and challenges. Chapter 2: Real-time kinetic assay technologies for characterising enzymes in metabolic pathways. Chapter 3: A bottom-up approach towards a full quantitative description of yeast energy metabolism: A systematic approach for estimating the kinetic parameters of isoenzymes under in vivo like conditions Chapter 4: A top-down approach for measuring enzyme kinetics in cell lysates: mimicking an in vivo environment. Section 6 – Sample preparation in Metabolomics Studies –Warwick Dunn & Catherine WinderChapter 1 - The use of continuous culture in systems biology investigations Chapter 2 - Metabolomic studies of yeast – methods for sample collection in profiling and quantitation studies Chapter 3 - The role of metabolomics in plant studies – views on sampling and data acquisition Chapter 4 - The study of mammaliam metabolism – how, when and why Chapter 5 - The study of the environment from a metabolomic perspective Section 7 – Mathematical modelling in Systems Biology –Kieran Smallbone & Evangelos Simeonidis Chapter 1: Building a kinetic model of a metabolic pathway Chapter 2: Making systems biology models reusable: the role of standards and biological semantics Chapter 3: From reaction networks to information flow - using modular response analysis to track the routes of information in large signalling networks Chapter 4: The mathematics of Metabolic Control Analysis Chapter 5: Constraint-based analysis of biochemical networks Section 8 – Understanding systems biology (Hans Westerhoff)1. Elementary mode analysis 2. Flux analysis3. Flux balance analysis4. Metabolic control analysis 5. Supply-demand analysis 6. Modular kinetic analysis 7. Regulation Analysis 8. Noise and heterogeneity Section 9 – Dealing with Systems Biology Research: – Neil W. Hayes Chapter 1 - Crossing the Boundaries; Delivering Interdisciplinary Science in a Disciplinary World