Introducing Markdown and Pandoc

Thomas Mailund is an associate professor in bioinformatics at Aarhus University, Denmark. He has a background in math and computer science, including experience programming and teaching in the C and R programming languages.  For the last decade, his main focus has been on genetics and evolutionary studies, particularly comparative genomics, speciation, and gene flow between emerging species.

• 1: The Beginner's Guide to Markdown and Pandoc.- 2: Why Use Markdown and Pandoc.- 3: Writing Markdown.- 4: Pandoc Markdown Extensions.- 5: Translating Documents.- 6: Math and Computer Programming Languages.- 7: Cross-referencing.- 8: Metadata.- 9: Using Templates.- 10: Preprocessing.- 11: Filters.- 12: Conclusions.