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OGENOTYPING BY SEQUENCING FOR CROP IMPROVEMENT A thoroughly up-to-date exploration of genotyping-by-sequencing technologies and related methods in plant science In Genotyping by Sequencing for Crop Improvement, a team of distinguished researchers delivers an in-depth and current exploration of the latest advances in genotyping-by-sequencing (GBS) methods, the statistical approaches used to analyze GBS data, and its applications, including quantitative trait loci (QTL) mapping, genome-wide association studies (GWAS), and genomic selection (GS) in crop improvement. This edited volume includes insightful contributions on a variety of relevant topics, like advanced molecular markers, high-throughput genotyping platforms, whole genome resequencing, QTL mapping with advanced mapping populations, analytical pipelines for GBS analysis, and more. The distinguished contributors explore traditional and advanced markers used in plant genotyping in extensive detail, and advanced genotyping platforms that cater to unique research purposes are discussed, as is the whole-genome resequencing (WGR) methodology. The included chapters also examine the applications of these technologies in several different crop categories, including cereals, pulses, oilseeds, and commercial crops. Genotyping by Sequencing for Crop Improvement also offers: A thorough introduction to molecular marker techniques and recent advancements in the technologyComprehensive explorations of the genotyping of seeds while preserving their viability, as well as advances in genomic selectionPractical discussions of opportunities and challenges relating to high throughput genotyping in polyploid cropsIn-depth examinations of recent advances and applications of GBS, GWAS, and GS in cereals, pulses, oilseeds, millets, and commercial cropsPerfect for practicing plant scientists with an interest in genotyping-by-sequencing technology, Genotyping by Sequencing for Crop Improvement will also earn a place in the libraries of researchers and students seeking a one-stop reference on the foundational aspects of – and recent advances in – genotyping-by-sequencing, genome-wide association studies, and genomic selection.
Humira Sonah, National Agri-Food Biotechnology Institute, Punjab, India Vinod Goyal, CCS Haryana Agriculture University, Hisar, India S. M. Shivaraj, Laval University, Quebec City, Canada Rupesh K. Deshmukh, Ramalingaswami Fellow, National Agri-Food Biotechnology Institute, Punjab, India
Chapter 1: Molecular marker techniques and recent advancementsDharminder Bhatia and Gagandeep Singh BajwaChapter 2: High-throughput genotyping platformsSandhya Sharma, Kuldeep Kumar, Kishor Tribhuvan, Reeta, Sandeep Kumar, Priyanka Jain, Swati Saxena, Joshita Vijayan, Harsha Shrivastava and Kishor GaikwadChapter 3: Opportunity and challenges for whole genome re-sequencing based genotyping in plantsSurbhi Kumawat, Gaurav Raturi, Pallavi Dhiman, Sreeja Sudhakarn, Nitika Rajora, Vandana Thakaral, Himanshu Yadav, Gunashri Padalkar, Yogesh Sharma, Vinaykumar Rachappanavar and Manish KumarChapter 4: QTL mapping using advanced mapping populations and high-throughput genotypingSweta Sinha*, Brij Kishore Kushwaha and Rupesh DeshmukhChapter 5: Genome-wide association study: approaches, applicability, and challengesAkshay S Sakhare, Suneetha Kota, Santosh Rathod, Brajendra Parmar and Viswanathan CChapter 6: Genotyping of seeds while preserving their viabilityVinaykumar Rachappanavar, J K Sharma and Himanshu PChapter 7: Genomic selection: Advances, applicability, and challengesNaina Garewal, Riya Joon, Ravneet Kaur and Kashmir SinghChapter 8: Analytical pipelines for the GBS analysisVinaykumar Rachappanavar, J K Sharma and Himanshu PChapter 9: Recent advances and applicability of GBS, GWAS, and GS in maizeAnshuman Tiwari, Shalu Choudhary, Jayendra Padiya, Abhijit Ubale, Venugopal Mikkilineni and Bharat CharChapter 10: Recent advances and applicability of GBS, GWAS, and GS in soybeanPrashant Raghunath Shingote, Dhananjay Narayanrao Gotarkar, Ravindra Ramrao Kale, Omkar Limbalkar, and Dhiraj Lalji WasuleChapter 11: Advances and applicability of genotyping technologies in cotton improvementShubham Bhardwaj, Vikas Devkar*, Amit Kumar, Alisha, Shivani Sharma, Rupesh K. Deshmukh and Gunvant B PatilChapter 12: Recent advances and applicability of GBS, GWAS, and GS in millet cropsPankaj S. Mundada¥, Swapnil B. Kadam¥, Anupama A. Pable and Vitthal T. BarvkarChapter 13: Recent advances and applicability of GBS, GWAS, and GS in pigeon peaAnuradha Singh and Nisha SinghChapter 14: Opportunity and challenges for high-throughput genotyping in sugarcanePrathima. P. Thirugnanasambandam, Avinash Singode, Lakshmipathy Talambedu and Senthilkumar ShanmugavelChapter 15: Recent advances and applicability of GBS, GWAS, and GS in polyploid cropsVandana Thakaral,*, Himanshu Yadav, Gunashri Padalkar, Surbhi Kumawat, Gaurav Raturi, Virender Kumar, Rushil Mandlik, Nitika Rajora and Manipal SinghChapter 16: Recent advances and applicability of GBS, GWAS, and GS in oilseed cropsSanskriti Vats*, Yogesh Sharma, Virender Kumar, Rushil Mandlik, Surbhi Kumawat, Himanshu Yadav, Pallavi Dhiman, Vandana Thakral, Md Aminul Islam and Sreeja Sudhakaran